Transcript: lnc-CHD1L-5:1

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:1 
LNCipedia gene ID: lnc-CHD1L-5
Location (hg38): chr1:147172697-147180173
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3372 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA55:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.6164 non-coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHD1L-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CHD1L-5:1
4.1 lnc-CHD1L-5:1
5.0 lnc-CHD1L-5:1
5.1 lnc-FCGR1A-43:1
5.2 lnc-CHD1L-5:1