Transcript: lnc-CHD2-4:17

Basic information

LNCipedia transcript ID: lnc-CHD2-4:17 
LNCipedia gene ID: lnc-CHD2-4
Ensembl Gene ID: ENSG00000258888
Ensembl Transcript ID: ENST00000555297
Location (hg38): chr15:93257198-93260475
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555297; ENST00000555297.1; RP11-326A13.1-001; OTTHUMT00000415105.1; NONHSAT049696
Alternative gene names: ENSG00000258888; RP11-326A13.1; ENSG00000258888.1; OTTHUMG00000171784.1; AC112693.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2427 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD2-4:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD2-3:1
3.1 lnc-CHD2-3:1
4.0 lnc-CHD2-3:1
4.1 lnc-CHD2-4:17
5.0 lnc-CHD2-4:17
5.1 lnc-TTLL13P-78:5
5.2 lnc-CHD2-4:17