Transcript: lnc-CHD2-4:5

Basic information

LNCipedia transcript ID: lnc-CHD2-4:5 
LNCipedia gene ID: lnc-CHD2-4
Ensembl Gene ID: ENSG00000257060
Ensembl Transcript ID: ENST00000553478
Location (hg38): chr15:93313206-93569483
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553478; ENST00000553478.1; RP11-266O8.1-005; OTTHUMT00000415159.1; NONHSAT049703
Alternative gene names: ENSG00000257060; RP11-266O8.1; ENSG00000257060.2; OTTHUMG00000171785.2; ENSG00000257060.6; AC091078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4589 non-coding 
CPAT coding probability 7.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD2-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD2-4:5
3.1 lnc-CHD2-4:5
4.0 lnc-CHD2-4:5
4.1 lnc-CHD2-4:5
5.0 lnc-CHD2-4:5
5.1 lnc-TTLL13P-78:14
5.2 lnc-CHD2-4:5