Transcript: lnc-CHD9-3:6

Basic information

LNCipedia transcript ID: lnc-CHD9-3:6 
LNCipedia gene ID: lnc-CHD9-3
Ensembl Gene ID: ENSG00000260963
Ensembl Transcript ID: ENST00000564361
Location (hg38): chr16:52607473-52611059
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564361.1; RP11-297L17.2-003; OTTHUMT00000422541.1; NONHSAT142541
Alternative gene names: ENSG00000260963.1; RP11-297L17.2; OTTHUMG00000173224.1; AC026462.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.7626 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD9-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD9-3:6
4.0 lnc-CHD9-3:6
4.1 lnc-CHD9-3:6
5.0 lnc-CHD9-3:6
5.1 lnc-ADGRG1-113:7
5.2 lnc-CHD9-3:6