Transcript: lnc-CHERP-1:1

Basic information

LNCipedia transcript ID: lnc-CHERP-1:1 
LNCipedia gene ID: lnc-CHERP-1
Location (hg38): chr19:16542623-16544814
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1534 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT062790; ENST00000596487.1
Alternative gene names: ENSG00000269399.1; CTD-3222D19.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7565 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHERP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHERP-1:1
4.0 lnc-CHERP-1:1
4.1 lnc-CHERP-1:1
5.0 lnc-CHERP-1:1
5.1 lnc-PALM3-78:1
5.2 lnc-CHERP-1:1