Transcript: lnc-CHIC2-1:1

Basic information

LNCipedia transcript ID: lnc-CHIC2-1:1 
LNCipedia gene ID: lnc-CHIC2-1
Ensembl Gene ID: ENSG00000251264
Ensembl Transcript ID: ENST00000512628
Location (hg38): chr4:54440502-54446723
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007759; ENST00000512628; ENST00000512628.1; RP11-545H22.1-001; OTTHUMT00000361416.1; NONHSAT096421
Alternative gene names: XLOC_003948; linc-CHIC2-1; ENSG00000251264; RP11-545H22.1; ENSG00000251264.1; OTTHUMG00000160611.1; AC098868.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.2344 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHIC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHIC2-1:1
3.1 lnc-CHIC2-1:1
4.0 lnc-CHIC2-1:1
4.1 lnc-CHIC2-1:1
5.0 lnc-CHIC2-1:1
5.1 lnc-FRYL-32:1
5.2 lnc-CHIC2-1:1