Transcript: lnc-CHMP2B-1:1

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:1 
LNCipedia gene ID: lnc-CHMP2B-1
Location (hg38): chr3:87089280-87098701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4299 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00005419; ENST00000428934; NONHSAT090683
Alternative gene names: XLOC_002726; linc-CHMP2B-1; ENSG00000232092; AC107204.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7297 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:1 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP2B-1:1
3.1 lnc-CHMP2B-1:1
4.0 lnc-CHMP2B-1:1
4.1 lnc-CHMP2B-1:1
5.0 lnc-CHMP2B-1:1
5.1 lnc-HTR1F-5:3
5.2 lnc-CHMP2B-1:1