Transcript: lnc-CHMP2B-1:5

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:5 
LNCipedia gene ID: lnc-CHMP2B-1
Ensembl Gene ID: ENSG00000281392
Ensembl Transcript ID: ENST00000629295
RefSeq ID: NR_047469
Location (hg38): chr3:87089280-87098702
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4300 bp
Exons: 2
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047469; ENST00000629295.1; NR_047469.1
Alternative gene names: ENSG00000281392.1; LINC00506


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7297 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:5 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP2B-1:5
4.0 lnc-CHMP2B-1:5
4.1 lnc-CHMP2B-1:5
5.0 lnc-CHMP2B-1:5
5.1 lnc-HTR1F-5:5
5.2 lnc-CHMP2B-1:5