Transcript: lnc-CHMP2B-1:8

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:8 
LNCipedia gene ID: lnc-CHMP2B-1
Ensembl Gene ID: ENSG00000281392
Ensembl Transcript ID: ENST00000628435
Location (hg38): chr3:87089303-87140352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628435.1
Alternative gene names: ENSG00000281392.1; LINC00506


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -187.0345 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:8 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CHMP2B-1:8
4.1 lnc-CHMP2B-1:8
5.0 lnc-CHMP2B-1:8
5.1 lnc-HTR1F-5:10
5.2 lnc-CHMP2B-1:8