Transcript: lnc-CHMP7-1:2

Basic information

LNCipedia transcript ID: lnc-CHMP7-1:2 
LNCipedia gene ID: lnc-CHMP7-1
Ensembl Gene ID: ENSG00000246582
Ensembl Transcript ID: ENST00000500853
RefSeq ID: NR_033928
Location (hg38): chr8:23225221-23230926
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1970 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014464; ENST00000500853.1; RP11-1149O23.3-002; OTTHUMT00000375452.1; NONHSAT125546; NR_033928; NR_033928.1
Alternative gene names: XLOC_006742; linc-CHMP7; ENSG00000246582.2; RP11-1149O23.3; OTTHUMG00000163784.1; AC100861.1; LOC389641


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4567 non-coding 
CPAT coding probability 21.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP7-1:2 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP7-1:1
3.1 lnc-CHMP7-1:2
4.0 lnc-CHMP7-1:2
4.1 lnc-CHMP7-1:2
5.0 lnc-CHMP7-1:2
5.1 lnc-RHOBTB2-8:7
5.2 lnc-CHMP7-1:2