Transcript: lnc-CHMP7-1:4

Basic information

LNCipedia transcript ID: lnc-CHMP7-1:4 
LNCipedia gene ID: lnc-CHMP7-1
Location (hg38): chr8:23225675-23228707
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1091 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014651; NONHSAT125548
Alternative gene names: XLOC_006742; linc-CHMP7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.9526 non-coding 
CPAT coding probability 34.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP7-1:4 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP7-1:2
3.1 lnc-CHMP7-1:4
4.0 lnc-CHMP7-1:4
4.1 lnc-CHMP7-1:4
5.0 lnc-CHMP7-1:4
5.1 lnc-RHOBTB2-8:9
5.2 lnc-CHMP7-1:4