Transcript: lnc-CHN1-1:1

Basic information

LNCipedia transcript ID: lnc-CHN1-1:1 
LNCipedia gene ID: lnc-CHN1-1
Location (hg38): chr2:174783046-174787928
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1879 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00003441; ENST00000416004; ENST00000416004.1; AC018890.4-001; OTTHUMT00000334151.1; NONHSAT075583
Alternative gene names: XLOC_002400; linc-CHRNA1; ENSG00000237104; AC018890.4; ENSG00000237104.1; OTTHUMG00000154154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.8014 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHN1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHN1-1:1
3.1 lnc-CHN1-1:1
4.0 lnc-CHN1-1:1
4.1 lnc-CHN1-1:1
5.0 lnc-CHN1-1:1
5.1 lnc-CHN1-1:1
5.2 lnc-CHN1-1:1