Transcript: lnc-CHN2-3:1

Basic information

LNCipedia transcript ID: lnc-CHN2-3:1 
LNCipedia gene ID: lnc-CHN2-3
Ensembl Gene ID: ENSG00000233517
Ensembl Transcript ID: ENST00000411479
Location (hg38): chr7:28987028-28988899
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411479.1; AC005162.5-001; OTTHUMT00000328270.1; NONHSAT119776
Alternative gene names: ENSG00000233517.1; AC005162.5; OTTHUMG00000152858.1; AC005162.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.4611 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHN2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHN2-3:1
4.0 lnc-CHN2-3:1
4.1 lnc-CHN2-3:1
5.0 lnc-CHN2-3:1
5.1 lnc-MTURN-30:1
5.2 lnc-CHN2-3:1