Transcript: lnc-CHODL-13:1

Basic information

LNCipedia transcript ID: lnc-CHODL-13:1 
LNCipedia gene ID: lnc-CHODL-13
Ensembl Gene ID: ENSG00000230233
Ensembl Transcript ID: ENST00000416002
Location (hg38): chr21:18614431-18650360
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 879 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028800; ENST00000416002; ENST00000416002.1; AF240627.2-001; OTTHUMT00000158275.1; NONHSAT081316
Alternative gene names: XLOC_013872; linc-NCAM2-5; ENSG00000230233; AF240627.2; ENSG00000230233.1; OTTHUMG00000074543.1; AF240627.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.7658 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHODL-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHODL-1:1
3.1 lnc-CHODL-1:1
4.0 lnc-CHODL-1:1
4.1 lnc-CHODL-1:1
5.0 lnc-CHODL-1:1
5.1 lnc-OLIG1-111:1
5.2 lnc-CHODL-13:1