Transcript: lnc-CHODL-14:1

Basic information

LNCipedia transcript ID: lnc-CHODL-14:1 
LNCipedia gene ID: lnc-CHODL-14
Location (hg38): chr21:19046310-19047684
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 790 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028801; ENST00000450653; ENST00000450653.1; AP000431.1-001; OTTHUMT00000158274.1; NONHSAT081323
Alternative gene names: XLOC_013873; linc-NCAM2-4; ENSG00000235965; AP000431.1; ENSG00000235965.1; OTTHUMG00000074542.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.2518 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHODL-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHODL-2:1
3.1 lnc-CHODL-2:1
4.0 lnc-CHODL-2:1
4.1 lnc-CHODL-2:1
5.0 lnc-CHODL-2:1
5.1 lnc-OLIG1-109:1
5.2 lnc-CHODL-14:1