Transcript: lnc-CHP1-3:1

Basic information

LNCipedia transcript ID: lnc-CHP1-3:1 
LNCipedia gene ID: lnc-CHP1-3
Ensembl Gene ID: ENSG00000259396
Ensembl Transcript ID: ENST00000559959
Location (hg38): chr15:41343080-41344225
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 476 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559959.1; RP11-16O9.2-001; OTTHUMT00000419435.1; NONHSAT041942
Alternative gene names: ENSG00000259396.1; RP11-16O9.2; OTTHUMG00000172608.1; AC087721.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.0554 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHP1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC012652.1.1-3:1
4.0 lnc-AC012652.1.1-3:1
4.1 lnc-AC012652.1.1-3:1
5.0 lnc-AC012652.1.1-3:1
5.1 lnc-TMEM62-29:1
5.2 lnc-CHP1-3:1