Transcript: lnc-CHRNA5-1:1

Basic information

LNCipedia transcript ID: lnc-CHRNA5-1:1 
LNCipedia gene ID: lnc-CHRNA5-1
Ensembl Gene ID: ENSG00000259555
Ensembl Transcript ID: ENST00000559120
Location (hg38): chr15:78625895-78628193
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1980 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559120.1; RP11-335K5.2-001; OTTHUMT00000418872.1; NONHSAT047582
Alternative gene names: ENSG00000259555.1; RP11-335K5.2; OTTHUMG00000172513.1; AC067863.2; AC067863.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.9915 non-coding 
CPAT coding probability 30.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRNA5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHRNA5-1:1
4.0 lnc-CHRNA5-1:1
4.1 lnc-CHRNA5-1:1
5.0 lnc-CHRNA5-1:1
5.1 lnc-HYKK-5:1
5.2 lnc-CHRNA5-1:1