Transcript: lnc-CHST1-2:1

Basic information

LNCipedia transcript ID: lnc-CHST1-2:1 
LNCipedia gene ID: lnc-CHST1-2
Ensembl Gene ID: ENSG00000255426
Ensembl Transcript ID: ENST00000532068
Location (hg38): chr11:45733994-45735766
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 860 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532068; ENST00000532068.1; CTD-2210P24.2-001; OTTHUMT00000390134.1; NONHSAT021129
Alternative gene names: ENSG00000255426; CTD-2210P24.2; ENSG00000255426.1; OTTHUMG00000166516.1; AC044839.3; AC044839.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.3811 non-coding 
CPAT coding probability 7.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST1-2:1
3.1 lnc-CHST1-2:1
4.0 lnc-CHST1-2:1
4.1 lnc-CHST1-2:1
5.0 lnc-CHST1-2:1
5.1 lnc-RAG2-55:1
5.2 lnc-CHST1-2:1