Transcript: lnc-CHST12-1:1

Basic information

LNCipedia transcript ID: lnc-CHST12-1:1 
LNCipedia gene ID: lnc-CHST12-1
RefSeq ID: NR_108066
Location (hg38): chr7:2437763-2447850
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2067 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000313156; ENST00000313156.3; AC004840.9-001; OTTHUMT00000325029.1; NONHSAT118800; NR_108066; NR_108066.1
Alternative gene names: ENSG00000175873; AC004840.9; ENSG00000175873.3; OTTHUMG00000152044.1; LOC101927181


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2611 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST12-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST12-1:2
3.1 lnc-CHST12-1:1
4.0 lnc-CHST12-1:1
4.1 lnc-CHST12-1:1
5.0 lnc-CHST12-1:1
5.1 lnc-GPER1-57:3
5.2 lnc-CHST12-1:1