Transcript: lnc-CHST2-1:1

Basic information

LNCipedia transcript ID: lnc-CHST2-1:1 
LNCipedia gene ID: lnc-CHST2-1
Ensembl Gene ID: ENSG00000243733
Ensembl Transcript ID: ENST00000492307
Location (hg38): chr3:143111802-143112359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005602; ENST00000492307; ENST00000492307.1; RP11-80H8.3-001; OTTHUMT00000354865.1; NONHSAT092519
Alternative gene names: XLOC_002848; linc-CHST2-1; ENSG00000243733; RP11-80H8.3; ENSG00000243733.1; OTTHUMG00000159353.1; AC018450.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.1647 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST2-1:1
3.1 lnc-CHST2-1:1
4.0 lnc-CHST2-1:1
4.1 lnc-CHST2-1:1
5.0 lnc-CHST2-1:1
5.1 lnc-PXYLP1-30:1
5.2 lnc-CHST2-1:1