Transcript: lnc-CHST2-2:2

Basic information

LNCipedia transcript ID: lnc-CHST2-2:2 
LNCipedia gene ID: lnc-CHST2-2
Ensembl Gene ID: ENSG00000241679
Ensembl Transcript ID: ENST00000465880
Location (hg38): chr3:143131274-143131891
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005603; ENST00000465880; ENST00000465880.1; RP11-80H8.4-002; OTTHUMT00000354854.1; NONHSAT092522
Alternative gene names: XLOC_002849; linc-C3orf58-2; ENSG00000241679; RP11-80H8.4; ENSG00000241679.2; OTTHUMG00000159352.1; AC018450.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.607 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST2-2:2
3.1 lnc-CHST2-2:2
4.0 lnc-CHST2-2:2
4.1 lnc-CHST2-2:2
5.0 lnc-CHST2-2:2
5.1 lnc-PXYLP1-31:3
5.2 lnc-CHST2-2:2