Transcript: lnc-CHST4-1:3

Basic information

LNCipedia transcript ID: lnc-CHST4-1:3 
LNCipedia gene ID: lnc-CHST4-1
Ensembl Gene ID: ENSG00000260520
Ensembl Transcript ID: ENST00000569271
Location (hg38): chr16:71513863-71517849
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 440 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569271.1; RP11-510M2.6-001; OTTHUMT00000434130.1
Alternative gene names: ENSG00000260520.1; RP11-510M2.6; OTTHUMG00000176864.1; AC010547.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.7911 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST4-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST4-1:3
4.0 lnc-CHST4-1:3
4.1 lnc-CHST4-1:3
5.0 lnc-CHST4-1:3
5.1 lnc-CHST4-1:3
5.2 lnc-CHST4-1:3