Transcript: lnc-CHST4-1:5

Basic information

LNCipedia transcript ID: lnc-CHST4-1:5 
LNCipedia gene ID: lnc-CHST4-1
Location (hg38): chr16:71513828-71517847
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 528 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT143484; FPKM1_group_11825_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.7911 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST4-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST4-1:5
4.0 lnc-CHST4-1:5
4.1 lnc-CHST4-1:5
5.0 lnc-CHST4-1:5
5.1 lnc-CHST4-1:5
5.2 lnc-CHST4-1:5