Transcript: lnc-CHST4-1:6

Basic information

LNCipedia transcript ID: lnc-CHST4-1:6 
LNCipedia gene ID: lnc-CHST4-1
RefSeq ID: NR_135171
Location (hg38): chr16:71513811-71517846
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135171.1
Alternative gene names: LOC105371335


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -139.7911 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST4-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CHST4-1:6
5.1 lnc-CHST4-1:6
5.2 lnc-CHST4-1:6