Transcript: lnc-CHST4-3:2

Basic information

LNCipedia transcript ID: lnc-CHST4-3:2 
LNCipedia gene ID: lnc-CHST4-3
Ensembl Gene ID: ENSG00000247324
Ensembl Transcript ID: ENST00000567341
Location (hg38): chr16:71462327-71464067
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 230 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567341.1; RP11-510M2.2-002; OTTHUMT00000433803.1; NONHSAT143481
Alternative gene names: ENSG00000247324.2; RP11-510M2.2; OTTHUMG00000176798.1; AC010547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.0417 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST4-3:2
4.0 lnc-CHST4-3:2
4.1 lnc-CHST4-3:2
5.0 lnc-CHST4-3:2
5.1 lnc-CHST4-3:2
5.2 lnc-CHST4-3:2