Transcript: lnc-CHST8-5:2

Basic information

LNCipedia transcript ID: lnc-CHST8-5:2 
LNCipedia gene ID: lnc-CHST8-5
Location (hg38): chr19:33553125-33557438
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1296 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026996; NONHSAT064258
Alternative gene names: XLOC_013043; linc-CHST8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.3461 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST8-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST8-1:2
3.1 lnc-CHST8-1:2
4.0 lnc-CHST8-1:2
4.1 lnc-CHST8-1:2
5.0 lnc-CHST8-1:2
5.1 lnc-GPI-27:2
5.2 lnc-CHST8-5:2