Transcript: lnc-CHSY1-3:3

Basic information

LNCipedia transcript ID: lnc-CHSY1-3:3 
LNCipedia gene ID: lnc-CHSY1-3
Ensembl Gene ID: ENSG00000259376
Ensembl Transcript ID: ENST00000558979
Location (hg38): chr15:101043716-101049456
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 491 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558979.1; RP11-505E24.3-001; OTTHUMT00000416703.1; NONHSAT051146
Alternative gene names: ENSG00000259376.1; RP11-505E24.3; OTTHUMG00000172068.1; AC090907.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3704 non-coding 
CPAT coding probability 9.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHSY1-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHSY1-4:1
4.0 lnc-CHSY1-3:3
4.1 lnc-CHSY1-3:3
5.0 lnc-CHSY1-3:3
5.1 lnc-CIB1-111:3
5.2 lnc-CHSY1-3:3