Transcript: lnc-CHSY1-5:4

Basic information

LNCipedia transcript ID: lnc-CHSY1-5:4 
LNCipedia gene ID: lnc-CHSY1-5
Ensembl Gene ID: ENSG00000259583
Ensembl Transcript ID: ENST00000560461
Location (hg38): chr15:100915657-100918841
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 688 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560461.1; RP11-66B24.4-003; OTTHUMT00000416702.1; NONHSAT051142
Alternative gene names: ENSG00000259583.1; RP11-66B24.4; OTTHUMG00000172067.1; ENSG00000259583.2; AC015712.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.4704 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHSY1-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHSY1-5:4
4.0 lnc-CHSY1-5:4
4.1 lnc-CHSY1-5:4
5.0 lnc-CHSY1-5:4
5.1 lnc-CIB1-110:15
5.2 lnc-CHSY1-5:4