Transcript: lnc-CHTF8-2:1

Basic information

LNCipedia transcript ID: lnc-CHTF8-2:1 
LNCipedia gene ID: lnc-CHTF8-2
Ensembl Gene ID: ENSG00000260798
Ensembl Transcript ID: ENST00000563916
Location (hg38): chr16:68814330-68823526
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 562 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563916.1; RP11-354M1.2-001; OTTHUMT00000433705.1; NONHSAT143305
Alternative gene names: ENSG00000260798.1; RP11-354M1.2; OTTHUMG00000176776.1; AC099314.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 176.5818 coding 
CPAT coding probability 10.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHTF8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHTF8-2:1
4.0 lnc-CHTF8-2:1
4.1 lnc-CHTF8-2:1
5.0 lnc-CHTF8-2:1
5.1 lnc-SLC12A4-15:1
5.2 lnc-CHTF8-2:1