Transcript: lnc-CIB1-2:2

Basic information

LNCipedia transcript ID: lnc-CIB1-2:2 
LNCipedia gene ID: lnc-CIB1-2
Ensembl Gene ID: ENSG00000259177
Ensembl Transcript ID: ENST00000560578
Location (hg38): chr15:90393490-90397881
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 458 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560578.1; RP11-154B12.3-001; OTTHUMT00000418070.1; NONHSAT048393
Alternative gene names: ENSG00000259177.1; RP11-154B12.3; OTTHUMG00000172361.1; AC018946.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.1377 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CIB1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABARAPL3-2:1
4.0 lnc-GABARAPL3-2:1
4.1 lnc-GABARAPL3-2:1
5.0 lnc-GABARAPL3-2:1
5.1 lnc-CIB1-6:1
5.2 lnc-CIB1-2:2