Transcript: lnc-CIB3-1:1

Basic information

LNCipedia transcript ID: lnc-CIB3-1:1 
LNCipedia gene ID: lnc-CIB3-1
Ensembl Gene ID: ENSG00000269243
Ensembl Transcript ID: ENST00000597983
Location (hg38): chr19:16123661-16139892
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2987 bp
Exons: 2
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499530; NONHSAT062771; ENST00000597983.1
Alternative gene names: ENSG00000246914; ENSG00000269243.1; CTD-2231E14.8; AC008894.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 99.3767 coding 
CPAT coding probability 26.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CIB3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CIB3-1:1
3.1 lnc-CIB3-1:1
4.0 lnc-CIB3-1:1
4.1 lnc-CIB3-1:1
5.0 lnc-CIB3-1:1
5.1 lnc-PALM3-64:4
5.2 lnc-CIB3-1:1