Transcript: lnc-CIB4-1:1

Basic information

LNCipedia transcript ID: lnc-CIB4-1:1 
LNCipedia gene ID: lnc-CIB4-1
Ensembl Gene ID: ENSG00000225378
Ensembl Transcript ID: ENST00000420852
Location (hg38): chr2:26671254-26674464
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003237; ENST00000420852.1; AC015977.6-001; OTTHUMT00000324720.1; NONHSAT069696
Alternative gene names: XLOC_002027; linc-CIB4; ENSG00000225378.1; AC015977.6; OTTHUMG00000151995.1; AC015977.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.172 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CIB4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CIB4-1:1
3.1 lnc-CIB4-1:1
4.0 lnc-CIB4-1:1
4.1 lnc-CIB4-1:1
5.0 lnc-CIB4-1:1
5.1 lnc-RBKS-48:1
5.2 lnc-CIB4-1:1