Transcript: lnc-CISD1-1:1

Basic information

LNCipedia transcript ID: lnc-CISD1-1:1 
LNCipedia gene ID: lnc-CISD1-1
Ensembl Gene ID: ENSG00000228527
Ensembl Transcript ID: ENST00000440189
Location (hg38): chr10:58304553-58305621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 328 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017829; ENST00000440189; ENST00000440189.1; RP11-179B15.5-001; OTTHUMT00000048141.1; NONHSAT013490
Alternative gene names: XLOC_008487; linc-UBE2D1; ENSG00000228527; RP11-179B15.5; ENSG00000228527.1; OTTHUMG00000018267.1; AC016396.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.7521 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CISD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CISD1-1:1
3.1 lnc-CISD1-1:1
4.0 lnc-CISD1-1:1
4.1 lnc-CISD1-1:1
5.0 lnc-CISD1-1:1
5.1 lnc-MTRNR2L5-14:2
5.2 lnc-CISD1-1:1