Transcript: lnc-CKAP4-2:2

Basic information

LNCipedia transcript ID: lnc-CKAP4-2:2 
LNCipedia gene ID: lnc-CKAP4-2
Ensembl Gene ID: ENSG00000257545
Ensembl Transcript ID: ENST00000551505
Location (hg38): chr12:106495958-106774918
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 570 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551505.4
Alternative gene names: ENSG00000257545.4; RP11-144F15.1; AC079385.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.6192 non-coding 
CPAT coding probability 72.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CKAP4-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-144F15.1.1-2:1
4.1 lnc-RP11-144F15.1.1-2:1
5.0 lnc-RP11-144F15.1.1-2:1
5.1 lnc-APPL2-18:1
5.2 lnc-CKAP4-2:2