Transcript: lnc-CKS1B-2:1

Basic information

LNCipedia transcript ID: lnc-CKS1B-2:1 
LNCipedia gene ID: lnc-CKS1B-2
Ensembl Gene ID: ENSG00000271380
Ensembl Transcript ID: ENST00000605085
Location (hg38): chr1:154961825-154962623
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 799 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006652; ENST00000605085.1
Alternative gene names: ENSG00000271380.1; RP11-307C12.12; AL451085.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.3353 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CKS1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CKS1B-2:1
4.0 lnc-CKS1B-2:1
4.1 lnc-CKS1B-2:1
5.0 lnc-CKS1B-2:1
5.1 lnc-LENEP-5:1
5.2 lnc-CKS1B-2:1