Transcript: lnc-CLASP2-2:1

Basic information

LNCipedia transcript ID: lnc-CLASP2-2:1 
LNCipedia gene ID: lnc-CLASP2-2
Ensembl Gene ID: ENSG00000227498
Ensembl Transcript ID: ENST00000442567
Location (hg38): chr3:34524818-34543880
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005755; ENST00000442567; ENST00000442567.2; AC018359.3-001; OTTHUMT00000341537.2; NONHSAT088961
Alternative gene names: XLOC_003080; linc-CLASP2-3; ENSG00000227498; AC018359.3; ENSG00000227498.2; OTTHUMG00000155766.2; AC018359.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.7921 non-coding 
CPAT coding probability 22.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLASP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLASP2-2:1
3.1 lnc-CLASP2-2:1
4.0 lnc-CLASP2-2:1
4.1 lnc-CLASP2-2:1
5.0 lnc-CLASP2-2:1
5.1 lnc-OSBPL10-31:1
5.2 lnc-CLASP2-2:1