Transcript: lnc-CLCNKB-1:1

Basic information

LNCipedia transcript ID: lnc-CLCNKB-1:1 
LNCipedia gene ID: lnc-CLCNKB-1
Ensembl Gene ID: ENSG00000227959
Ensembl Transcript ID: ENST00000424774
Location (hg38): chr1:16155211-16157329
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 904 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424774.1; RP11-276H7.2-001; OTTHUMT00000026325.1; NONHSAT001086
Alternative gene names: ENSG00000227959.1; RP11-276H7.2; OTTHUMG00000009528.1; AL451042.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.0849 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLCNKB-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLCNKB-1:1
4.0 lnc-CLCNKB-1:1
4.1 lnc-CLCNKB-1:1
5.0 lnc-CLCNKB-1:1
5.1 lnc-SZRD1-10:1
5.2 lnc-CLCNKB-1:1