Transcript: lnc-CLDN20-22:1

Basic information

LNCipedia transcript ID: lnc-CLDN20-22:1 
LNCipedia gene ID: lnc-CLDN20-22
RefSeq ID: NR_134597
Location (hg38): chr6:155514844-155526018
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 533 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134597.1
Alternative gene names: LOC105378068


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -299.2084 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN20-22:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-GTF2H5-22:1
5.1 lnc-GTF2H5-22:1
5.2 lnc-CLDN20-22:1