Transcript: lnc-CLDN20-22:3

Basic information

LNCipedia transcript ID: lnc-CLDN20-22:3 
LNCipedia gene ID: lnc-CLDN20-22
Location (hg38): chr6:155523735-155526070
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 656 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011997; NONHSAT115675
Alternative gene names: XLOC_005511; linc-ARID1B-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.8211 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN20-22:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLDN20-1:1
3.1 lnc-CLDN20-1:1
4.0 lnc-CLDN20-1:1
4.1 lnc-CLDN20-1:1
5.0 lnc-CLDN20-1:1
5.1 lnc-GTF2H5-22:3
5.2 lnc-CLDN20-22:3