Transcript: lnc-CLDN9-1:4

Basic information

LNCipedia transcript ID: lnc-CLDN9-1:4 
LNCipedia gene ID: lnc-CLDN9-1
Ensembl Gene ID: ENSG00000272079
Ensembl Transcript ID: ENST00000607794
Location (hg38): chr16:3006120-3007388
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607794.2
Alternative gene names: ENSG00000272079.2; LA16c-380H5.5; AC004233.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.4392 non-coding 
CPAT coding probability 7.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN9-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CLDN9-1:4
4.1 lnc-CLDN9-1:4
5.0 lnc-CLDN9-1:4
5.1 lnc-CLDN9-1:4
5.2 lnc-CLDN9-1:4