Transcript: lnc-CLDN9-20:1

Basic information

LNCipedia transcript ID: lnc-CLDN9-20:1 
LNCipedia gene ID: lnc-CLDN9-20
Location (hg38): chr16:2992113-3002005
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 556 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000572439.1; LINC00514-003; OTTHUMT00000436957.1; NONHSAT147903
Alternative gene names: ENSG00000262152.1; LINC00514; OTTHUMG00000177448.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.2495 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN9-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAQR4-1:5
4.0 LINC00514:5
4.1 LINC00514:5
5.0 LINC00514:5
5.1 lnc-CLDN9-19:1
5.2 lnc-CLDN9-20:1