Transcript: lnc-CLEC16A-7:2

Basic information

LNCipedia transcript ID: lnc-CLEC16A-7:2 
LNCipedia gene ID: lnc-CLEC16A-7
Location (hg38): chr16:11196177-11224516
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000572466.1; RP11-396B14.2-001; OTTHUMT00000436705.1; NONHSAT140555
Alternative gene names: ENSG00000263033.1; RP11-396B14.2; OTTHUMG00000177399.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3349 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC16A-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLEC16A-2:1
4.0 lnc-CLEC16A-2:1
4.1 lnc-CLEC16A-2:1
5.0 lnc-CLEC16A-2:1
5.1 lnc-PDXDC1-46:2
5.2 lnc-CLEC16A-7:2