Transcript: lnc-CLEC18B-7:1

Basic information

LNCipedia transcript ID: lnc-CLEC18B-7:1 
LNCipedia gene ID: lnc-CLEC18B-7
Ensembl Gene ID: ENSG00000259972
Ensembl Transcript ID: ENST00000561921
Location (hg38): chr16:74310100-74335346
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561921.1; AC009120.6-004; OTTHUMT00000435713.1; NONHSAT143672
Alternative gene names: ENSG00000259972.1; AC009120.6; OTTHUMG00000176993.2; ENSG00000259972.2; AC009120.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.9794 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC18B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLEC18B-2:1
4.0 lnc-CLEC18B-7:1
4.1 lnc-CLEC18B-7:1
5.0 lnc-CLEC18B-7:1
5.1 lnc-MLKL-16:1
5.2 lnc-CLEC18B-7:1