Transcript: lnc-CLEC20A-1:1

Basic information

LNCipedia transcript ID: lnc-CLEC20A-1:1 
LNCipedia gene ID: lnc-CLEC20A-1
Location (hg38): chr1:178493899-178499634
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2927 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000445098.1; LINC00083-001; OTTHUMT00000084757.1
Alternative gene names: ENSG00000188585.5; LINC00083; OTTHUMG00000035021.1; FLJ44005; RP4-593C16.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.4135 non-coding 
CPAT coding probability 97.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CLEC20A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANGPTL1-1:1
4.0 LINC00083:1
4.1 LINC00083:1
5.0 LINC00083:1
5.1 lnc-SH2D1B-161:1
5.2 lnc-CLEC20A-1:1