Transcript: lnc-CLEC20A-8:3

Basic information

LNCipedia transcript ID: lnc-CLEC20A-8:3 
LNCipedia gene ID: lnc-CLEC20A-8
Location (hg38): chr1:178541232-178541573
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 342 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_ge08_LHX4_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.2845 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC20A-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANGPTL1-8:3
4.0 lnc-ANGPTL1-8:3
4.1 lnc-ANGPTL1-8:3
5.0 lnc-ANGPTL1-8:3
5.1 lnc-SH2D1B-164:3
5.2 lnc-CLEC20A-8:3