Transcript: lnc-CLEC3A-1:1

Basic information

LNCipedia transcript ID: lnc-CLEC3A-1:1 
LNCipedia gene ID: lnc-CLEC3A-1
Ensembl Gene ID: ENSG00000261837
Ensembl Transcript ID: ENST00000568764
Location (hg38): chr16:78534374-78535648
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 707 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568764.1; RP11-264L1.3-001; OTTHUMT00000434345.1; NONHSAT143828
Alternative gene names: ENSG00000261837.1; RP11-264L1.3; OTTHUMG00000176924.1; AC046158.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.123 non-coding 
CPAT coding probability 6.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC3A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLEC3A-1:1
4.0 lnc-CLEC3A-1:1
4.1 lnc-CLEC3A-1:1
5.0 lnc-CLEC3A-1:1
5.1 lnc-CRISPLD2-93:1
5.2 lnc-CLEC3A-1:1