Transcript: lnc-CLEC3A-2:1

Basic information

LNCipedia transcript ID: lnc-CLEC3A-2:1 
LNCipedia gene ID: lnc-CLEC3A-2
Location (hg38): chr16:78897165-78899644
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2480 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000568885.1; RP11-319G9.3-001; OTTHUMT00000434352.1; NONHSAT143831
Alternative gene names: ENSG00000260816.1; RP11-319G9.3; OTTHUMG00000176931.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.9421 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC3A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLEC3A-2:1
4.0 lnc-CLEC3A-2:1
4.1 lnc-CLEC3A-2:1
5.0 lnc-CLEC3A-2:1
5.1 lnc-CRISPLD2-91:2
5.2 lnc-CLEC3A-2:1