Transcript: lnc-CLEC6A-1:2

Basic information

LNCipedia transcript ID: lnc-CLEC6A-1:2 
LNCipedia gene ID: lnc-CLEC6A-1
Ensembl Gene ID: ENSG00000256101
Ensembl Transcript ID: ENST00000539795
Location (hg38): chr12:8321953-8329614
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539795; ENST00000539795.1; RP11-90D4.3-001; OTTHUMT00000400537.1; NONHSAT026327
Alternative gene names: ENSG00000256101; RP11-90D4.3; ENSG00000256101.1; OTTHUMG00000168666.1; ENSG00000256101.5; AC092745.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.3273 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC6A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLEC6A-1:2
3.1 lnc-CLEC6A-1:2
4.0 lnc-CLEC6A-1:2
4.1 lnc-CLEC6A-1:2
5.0 lnc-CLEC6A-1:2
5.1 lnc-CLEC4D-4:2
5.2 lnc-CLEC6A-1:2