Transcript: lnc-CLIC4-2:1

Basic information

LNCipedia transcript ID: lnc-CLIC4-2:1 
LNCipedia gene ID: lnc-CLIC4-2
Location (hg38): chr1:25041173-25047348
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1015 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001961; NONHSAT001683
Alternative gene names: XLOC_000099; linc-RHD-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.4396 non-coding 
CPAT coding probability 30.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLIC4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLIC4-1:1
3.1 lnc-CLIC4-2:1
4.0 lnc-CLIC4-2:1
4.1 lnc-CLIC4-2:1
5.0 lnc-CLIC4-2:1
5.1 lnc-SRRM1-12:8
5.2 lnc-CLIC4-2:1