Transcript: lnc-CLIC4-2:6

Basic information

LNCipedia transcript ID: lnc-CLIC4-2:6 
LNCipedia gene ID: lnc-CLIC4-2
Location (hg38): chr1:25031087-25052786
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10994 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000064178.1|MICT00000005794.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.6992 non-coding 
CPAT coding probability 18.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLIC4-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CLIC4-2:6
5.0 lnc-CLIC4-2:6
5.1 lnc-SRRM1-12:4
5.2 lnc-CLIC4-2:6